Publications related to the data presented in T1TAdb:
Data were mostly based on the papers by:
- Arnion et al.: Mechanistic insights into type I toxin antitoxin systems in Helicobacter pylori: the importance of mRNA folding in controlling toxin expression. Nucleic Acids Res. 2017 May 5;45(8):4782-4795
- Fozo et al.: Abundance of type I toxin-antitoxin systems in bacteria: searches for new candidates and discovery of novel families. Nucleic Acids Res. 2010 Jun;38(11):3743-59
The following publications were also used:
- Germain-Amiot et al.: A novel Staphylococcus aureus cis-trans type I toxin-antitoxin module with dual effects on bacteria and host cells. Nucleic Acids Res. 2019 Feb 28;47(4):1759-73
- Masachis and Darfeuille: Type I Toxin-Antitoxin Systems: Regulating Toxin Expression via Shine-Dalgarno Sequence Sequestration and Small RNA Binding. Microbiol Spectr. 2018 Jul;6(4):RWR-0030-2018
- Maikova et al.: Discovery of new type I toxin-antitoxin systems adjacent to CRISPR arrays in Clostridium difficile. Nucleic Acids Res. 2018 May 18;46(9):4733-51
- Folli et al.: Toward the identification of a type I toxin-antitoxin system in the plasmid DNA of dairy Lactobacillus rhamnosus. Sci Rep. 2017 Sep 21;7(1):12051
- Kristiansen et al.: Mutually exclusive RNA secondary structures regulate translation initiation of DinQ in Escherichia coli. RNA. 2016 Nov;22(11):1739-49
- Meißner et al.: In Vitro Characterization of the Type I Toxin-Antitoxin System bsrE/SR5 from Bacillus subtilis. J Biol Chem. 2016 Jan 8;291(2):560-71
- Wen and Fozo: sRNA antitoxins: more than one way to repress a toxin. Toxins (Basel). 2014 Aug 4;6(8):2310-35
- Guo et al.: RalR (a DNase) and RalA (a small RNA) form a type I toxin-antitoxin system in Escherichia coli. Nucleic Acids Res. 2014 Jun;42(10):6448-62
- Pinel-Marie et al.: Dual toxic-peptide-coding Staphylococcus aureus RNA under antisense regulation targets host cells and bacterial rivals unequally. Cell Rep. 2014 Apr 24;7(2):424-35
- Wen et al.: The ZorO-OrzO type I toxin-antitoxin locus: repression by the OrzO antitoxin. Nucleic Acids Res. 2014 Feb;42(3):1930-46
- Jahn and Brantl: One antitoxin--two functions: SR4 controls toxin mRNA decay and translation. Nucleic Acids Res. 2013 Nov;41(21):9870-80
- Fozo: New type I toxin-antitoxin families from “wild“ and laboratory strains of E. coli: Ibs-Sib, ShoB-OhsC and Zor-Orz. RNA Biol. 2012 Dec;9(12):1504-12
- Weaver et al.: The par toxin-antitoxin system from Enterococcus faecalis plasmid pAD1 and its chromosomal homologs. RNA Biol. 2012 Dec;9(12):1498-503
- Durand et al.: The essential function of B. subtilis RNase III is to silence foreign toxin genes. PLoS Genet. 2012;8(12):e1003181
- Durand et al.: Type I toxin-antitoxin systems in Bacillus subtilis. RNA Biol. 2012 Dec;9(12):1491-7
- Sayed et al.: A cis-antisense RNA acts in trans in Staphylococcus aureus to control translation of a human cytolytic peptide. Nat Struct Mol Biol. 2011 Dec 25;19(1):105-12
- Han et al.: Recognition and discrimination of target mRNAs by Sib RNAs, a cis-encoded sRNA family. Nucleic Acids Res. 2010 Sep;38(17):5851-66
- Weaver: Prevalence of Fst-like toxin-antitoxin systems. Microbiology. 2010 Apr;156(Pt 4):975-7
- Sharma et al.: The primary transcriptome of the major human pathogen Helicobacter pylori. Nature. 2010 Mar 11;464(7286):250-5
- Weaver et al.: Identification and characterization of a family of toxin-antitoxin systems related to the Enterococcus faecalis plasmid pAD1 par addiction module. Microbiology. 2009 Sep;155(Pt 9):2930-40
- Kawano et al.: An antisense RNA controls synthesis of an SOS-induced toxin evolved from an antitoxin. Mol Microbiol. 2007 May;64(3):738-54
- Darfeuille et al.: An antisense RNA inhibits translation by competing with standby ribosomes. Mol Cell. 2007 May 11;26(3):381-92
- Pichon et al.: Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains. Proc Natl Acad Sci U S A. 2005 Oct 4;102(40):14249-54
- Kawano et al.: Molecular characterization of long direct repeat (LDR) sequences expressing a stable mRNA encoding for a 35-amino-acid cell-killing peptide and a cis-encoded small antisense RNA in Escherichia coli. Mol Microbiol. 2002 Jul;45(2):333-49
- Greenfield et al.: Antisense RNA regulation of the par post-segregational killing system: structural analysis and mechanism of binding of the antisense RNA, RNAII and its target, RNAI. Mol. Microbiol. 2001 Oct;42(2):527-37
- Pedersen and Gerdes: Multiple hok genes on the chromosome of Escherichia coli. Mol Microbiol. 1999 Jun;32(5):1090-102
- Franch et al.: Programmed cell death by hok/sok of plasmid R1: processing at the hok mRNA 3’-end triggers structural rearrangements that allow translation and antisense RNA binding. J Mol Biol. 1997 Oct 17;273(1):38-51
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